Make OpenAlex work #1168
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Make OpenAlex work #1168
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Pull Request Overview
This PR adds support for removing the DOI prefix from OpenAlex API responses and includes a test to verify OpenAlex integration works correctly.
- Adds DOI prefix removal logic to normalize DOI format from OpenAlex responses
- Introduces a new test to verify OpenAlex provider functionality
- Adjusts whitespace formatting in the OpenAlex client code
Reviewed Changes
Copilot reviewed 3 out of 3 changed files in this pull request and generated 1 comment.
| File | Description |
|---|---|
| tests/test_clients.py | Imports OpenAlexProvider and adds test for OpenAlex DOI query functionality |
| src/paperqa/clients/openalex.py | Adds DOI prefix normalization to remove "https://doi.org/" prefix from OpenAlex responses and adjusts whitespace |
| tests/cassettes/test_does_openalex_work[10.1021-acs.jctc.5b00178].yaml | VCR cassette recording for the new OpenAlex test |
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It turns out openalex never worked if you query on DOI. OpenAlex refers to DOIs always with the URL prefix (e.g., https://doi.org/10xxx/xxxxx). So when it returned articles, they had DOIs that didn't match the requested DOIs and we rejected them as failed. This fixes and adds a low-effort unit test that just checks if openalex is working.
Note
Normalize OpenAlex DOIs by removing the https://doi.org/ prefix before comparison and add a VCR test to verify DOI queries work via OpenAlexProvider.
doiby removinghttps://doi.org/prefix in API results before matching against requested DOI.OpenAlexProviderto tests and new async testtest_does_openalex_workquerying by DOI withfields=["open_access"].OpenAlex.Written by Cursor Bugbot for commit 0da01b2. Configure here.